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jzshared

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dnalongbench

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jzshared 6

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'gene_expr_change', 'ABC_score'}) and 2 missing columns ({'allele1', 'allele2'}).

This happened while the csv dataset builder was generating data using

hf://datasets/jzshared/dnalongbench/enhancer_target_gene/targets/CRISPRi_EPI_K562_Gasperini_hg19.data.tsv (at revision 976f4448d76679f496d988c9d70d0e8c9a310c87)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              gene_chrom: string
              gene_start: int64
              gene_end: int64
              region_chrom: string
              region_start: int64
              region_end: int64
              gene_id: string
              gene_strand: string
              region_id: string
              target: string
              subset: string
              gene_expr_change: double
              distance_to_tss: int64
              ABC_score: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1931
              to
              {'gene_chrom': Value('string'), 'gene_start': Value('int64'), 'gene_end': Value('int64'), 'region_chrom': Value('string'), 'region_start': Value('int64'), 'region_end': Value('int64'), 'gene_id': Value('string'), 'gene_strand': Value('string'), 'region_id': Value('string'), 'target': Value('string'), 'subset': Value('string'), 'allele1': Value('string'), 'allele2': Value('string'), 'distance_to_tss': Value('int64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1334, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 911, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'gene_expr_change', 'ABC_score'}) and 2 missing columns ({'allele1', 'allele2'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/jzshared/dnalongbench/enhancer_target_gene/targets/CRISPRi_EPI_K562_Gasperini_hg19.data.tsv (at revision 976f4448d76679f496d988c9d70d0e8c9a310c87)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)