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FlowFinal

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protein-generation
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FlowFinal

Commit History

Add comprehensive documentation index
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Add comprehensive documentation: results_analysis_conclusions_latex.tex
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Add comprehensive documentation: cfg_dataset_generation_pipeline_latex.tex
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Add comprehensive documentation: flow_model_training_latex.tex
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Add comprehensive documentation: compressor_decompressor_latex.tex
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Add comprehensive documentation: decoder_process_latex.tex
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Add comprehensive documentation: encoder_process_latex.tex
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Add duplicate sequences file from data2 directory
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Add OLD_MODEL embedding: generated_amps_best_model_very_strong_cfg_20250829_OLD_MODEL.pt
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Add OLD_MODEL embedding: generated_amps_best_model_strong_cfg_20250829_OLD_MODEL.pt
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Add OLD_MODEL embedding: generated_amps_best_model_weak_cfg_20250829_OLD_MODEL.pt
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Add OLD_MODEL embedding: generated_amps_best_model_no_cfg_20250829_OLD_MODEL.pt
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Add OLD_MODEL comparison: decoded_sequences_very_strong_cfg_150_20250829_OLD_MODEL.txt
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Add OLD_MODEL comparison: decoded_sequences_strong_cfg_75_20250829_OLD_MODEL.txt
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Add OLD_MODEL comparison: decoded_sequences_weak_cfg_30_20250829_OLD_MODEL.txt
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Add OLD_MODEL comparison: decoded_sequences_no_cfg_00_20250829_OLD_MODEL.txt
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Add missing file: upload_to_huggingface.py
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Add missing file: generate_paper_figures.py
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Add comprehensive model and results summary
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Add complete dataset sequences
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Add mic_summary_20250829.json
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Add apex_results_all_cfg_comparison_20250829.json
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Add apex_results_very_strong_cfg_150_20250829.json
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Add apex_results_strong_cfg_75_20250829.json
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Add apex_results_weak_cfg_30_20250829.json
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Add apex_results_no_cfg_00_20250829.json
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Add decoded_sequences_very_strong_cfg_150_20250829.txt
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esunAI commited on

Add decoded_sequences_strong_cfg_75_20250829.txt
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Add decoded_sequences_weak_cfg_30_20250829.txt
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esunAI commited on

Add decoded_sequences_no_cfg_00_20250829.txt
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Add generated_amps_best_model_very_strong_cfg_20250829.pt
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esunAI commited on

Add generated_amps_best_model_strong_cfg_20250829.pt
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esunAI commited on

Add generated_amps_best_model_weak_cfg_20250829.pt
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esunAI commited on

Add generated_amps_best_model_no_cfg_20250829.pt
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Add summary_statistics.csv
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Add complete_amp_results.csv
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Add hmd_amp_cfg_analysis.csv
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Add hmd_amp_detailed_results.csv
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Add generated_sequences_20250829_144923.fasta
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Add uniprotkb_AND_reviewed_true_AND_model_o_2025_08_29.fasta
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Add cfgdata.fasta
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Add combined_final.fasta
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Add all_peptides_data.json
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Add launch_full_data_training.sh
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Add training_output.log
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Add training_output_h100_max.log
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Add h100_maximized_training.log
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Add fresh_training_aug29.log
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Add latex_tables.tex
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Add supplementary_data.tex
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