diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..0f20ae91fa7e7c7de355fae46b87a66d5cb7d61e --- /dev/null +++ b/.gitignore @@ -0,0 +1,130 @@ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +env/ +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +*.egg-info/ +.installed.cfg +*.egg + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# pyenv +.python-version + +# dotenv +.env + +# virtualenv +.venv +venv/ +ENV/ + +# Sphinx documentation +docs/_build/ + +# mkdocs documentation +/site +docs/*.png + +# mypy +.mypy_cache/ + +# vscode cache +.vscode + +# Pycharm files +.idea + +### macOS template +*.DS_Store +.AppleDouble +.LSOverride + +# serverless +**/.serverless +**/node_modules + +# terraform +**/.terraform +*.tfstate* + +# exclude temp files from source control +temp/ +tmp/ + +# exclude data from source control by default +/data/* + +!/data/sat2023-sample/ +!/data/cnf-sample/ + +!/data/sat2023-cos-similarity-dataset/ +/data/sat2023-cos-similarity-dataset/* +!/data/sat2023-cos-similarity-dataset/results_main_detailed.csv + +# Configurations +/config/ + +# Logs +lightning_logs/ + +# Models +/models/ + + +# Poetry code artifact settings +.poetry/ +poetry.toml + +# Mise +.mise.toml +mise.toml diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..429660cb1b8f3c20b6c53da278e47d5ce66df9ec --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,118 @@ +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v2.4.0 + hooks: + - id: requirements-txt-fixer + files: requirements.txt|requirements-dev.txt|requirements-test.txt + - id: trailing-whitespace + exclude: | + (?x)^( + notebooks/ + ) + args: [--markdown-linebreak-ext=md] + - id: end-of-file-fixer + exclude: | + (?x)^( + notebooks/ + ) + - id: check-yaml + - id: check-symlinks + - id: check-toml + - id: check-added-large-files + args: ["--maxkb=1000"] + - repo: https://github.com/asottile/add-trailing-comma + rev: v3.1.0 + hooks: + - id: add-trailing-comma + - repo: https://github.com/psf/black + rev: 23.1.0 + hooks: + - id: black + exclude: | + (?x)^( + notebooks/ + ) + - repo: https://github.com/pycqa/isort + rev: "5.12.0" + hooks: + - id: isort + exclude: | + (?x)^( + notebooks/ + ) + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.9.7 + hooks: + - id: ruff # linter + exclude: | + (?x)^( + scripts/| + notebooks/ + ) + # - id: ruff-format + - repo: local + hooks: + - id: update-req + name: Update requirements.txt + stages: [pre-commit] + language: system + entry: uv + files: uv.lock|requirements.txt + pass_filenames: false + args: + [ + "export", + "--format", + "requirements-txt", + "--no-hashes", + "--no-dev", + "-o", + "requirements.txt", + ] + - id: update-dev-req + name: Update requirements-dev.txt + stages: [pre-commit] + language: system + entry: uv + files: uv.lock|requirements-dev.txt + pass_filenames: false + args: + [ + "export", + "--format", + "requirements-txt", + "--no-hashes", + "--group", + "dev", + "--group", + "test", + "-o", + "requirements-dev.txt", + ] + - id: mypy + name: Running mypy + stages: [commit] + language: system + entry: uv run mypy + args: [--install-types, --non-interactive] + types: [python] + exclude: | + (?x)^( + scripts/| + notebooks/ + ) + + # - id: pytest + # name: pytest + # stages: [commit] + # language: system + # entry: poetry run pytest + # types: [python] + + # - id: pytest-cov + # name: pytest + # stages: [push] + # language: system + # entry: poetry run pytest --cov --cov-fail-under=100 + # types: [python] + # pass_filenames: false diff --git a/README.md b/README.md index 344cfd0c1a17907113abdcf03b00fb1340919a65..9ee8d52ecb02104a9c7dd0375559c9969915dbed 100644 --- a/README.md +++ b/README.md @@ -11,4 +11,20 @@ license: apache-2.0 short_description: tdb --- -An example chatbot using [Gradio](https://gradio.app), [`huggingface_hub`](https://huggingface.co/docs/huggingface_hub/v0.22.2/en/index), and the [Hugging Face Inference API](https://huggingface.co/docs/api-inference/index). \ No newline at end of file +# TDA Agent + +# Development setup + +To start developing you need the following tools: + + * [uv](https://docs.astral.sh/uv/) + +To start, sync all the dependencies with `uv sync --all-groups`. +Then, install the pre-commit hooks (`uv run pre-commit install`) to +ensure that future commits comply with the bare minimum to keep +code _readable_. + + +## Old content + +An example chatbot using [Gradio](https://gradio.app), [`huggingface_hub`](https://huggingface.co/docs/huggingface_hub/v0.22.2/en/index), and the [Hugging Face Inference API](https://huggingface.co/docs/api-inference/index). diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000000000000000000000000000000000000..824ba2891f1c61fd9a75047b77878fac0f9759b0 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,132 @@ +[project] +name = "tdagent" +version = "0.1.0" +description = "TDA Agent implemented for huggingface hackathon." +authors = [ + { name = "Pedro Completo Bento", email = "pedrobento988@gmail.com" }, + { name = "Josep Pon Farreny", email = "ponpepo@gmail.com" }, + { name = "Miguel Rodin Rodriguez", email = "miguelrodinrodriguez@gmail.com" }, + { name = "Sofia Jeronimo dos Santos", email = "sofia.santos@siemens.com" }, + { name = "Rodrigo Dominguez Sanz", email = "rodrigo.dominguez-sanz@siemens.com" }, +] +requires-python = ">=3.10,<4" +readme = "README.md" +license = "" +dependencies = [ + "huggingface-hub>=0.32.3", +] + +[project.scripts] + + +[dependency-groups] +dev = [ + "mypy~=1.14", + "ruff>=0.9,<1", + "pre-commit~=3.4", + "pip-audit>=2.9.0", +] +test = [ + "pytest>=7.4.4,<8", + "pytest-cov>=4.1.0,<5", + "pytest-randomly>=3.15.0,<4", + "xdoctest>=1.1.2,<2", +] + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + +[tool.uv] +package = false +default-groups = ["dev", "test"] + +[tool.uv.workspace] +members = ["test"] + +[tool.black] +target-version = ["py39", "py310", "py311"] +line-length = 88 + +[tool.isort] +profile = "black" +lines_after_imports = 2 + +[tool.mypy] +cache_dir = ".cache/mypy/" +ignore_missing_imports = true +no_implicit_optional = true +check_untyped_defs = true +strict_equality = true +disallow_any_generics = true +disallow_subclassing_any = true +disallow_untyped_calls = true +disallow_untyped_defs = true +disallow_incomplete_defs = true +disallow_untyped_decorators = true +warn_redundant_casts = true +warn_unused_ignores = true +exclude = "docs/" +plugins = [] # ["numpy.typing.mypy_plugin", "pydantic.mypy"] + +[[tool.mypy.overrides]] +module = "tests.*" +disallow_untyped_defs = false +disallow_incomplete_defs = false + +[tool.pytest.ini_options] +cache_dir = ".cache" +testpaths = ["tests", "tda_agent"] +addopts = [ + "--strict", + "-r sxX", + "--cov-report=html", + "--cov-report=term-missing:skip-covered", + "--no-cov-on-fail", + "--xdoc", +] +console_output_style = "count" +markers = "" +filterwarnings = ["ignore::DeprecationWarning"] + +[tool.ruff] +cache-dir = ".cache/ruff" +exclude = [ + ".git", + "__pycache__", + "docs/source/conf.py", + "old", + "build", + "dist", + ".venv", + "scripts", +] +line-length = 88 + +[tool.ruff.lint] +select = ["ALL"] +ignore = ["D100", "D104", "D107", "D401", "EM102", "ERA001", "TRY003"] + +[tool.ruff.lint.flake8-quotes] +inline-quotes = "double" + +[tool.ruff.lint.flake8-bugbear] +# Allow default arguments like, e.g., `data: List[str] = fastapi.Query(None)`. +extend-immutable-calls = ["typer.Argument", "typer.Option"] + +[tool.ruff.lint.pep8-naming] +ignore-names = ["F", "L"] + +[tool.ruff.lint.isort] +lines-after-imports = 2 + +[tool.ruff.lint.mccabe] +max-complexity = 18 + +[tool.ruff.lint.pydocstyle] +convention = "google" + +[tool.ruff.lint.per-file-ignores] +"*/__init__.py" = ["F401"] +"tdagent/cli/**/*.py" = ["D103", "T201"] +"tests/*.py" = ["D103", "PLR2004", "S101"] diff --git a/requirements-dev.txt b/requirements-dev.txt new file mode 100644 index 0000000000000000000000000000000000000000..7bfae6b358a1160b4cc46fe507fcfc001943a895 --- /dev/null +++ b/requirements-dev.txt @@ -0,0 +1,55 @@ +# This file was autogenerated by uv via the following command: +# uv export --format requirements-txt --no-hashes --group dev --group test -o requirements-dev.txt +boolean-py==5.0 +cachecontrol==0.14.3 +certifi==2025.4.26 +cfgv==3.4.0 +charset-normalizer==3.4.2 +colorama==0.4.6 ; sys_platform == 'win32' +coverage==7.8.2 +cyclonedx-python-lib==9.1.0 +defusedxml==0.7.1 +distlib==0.3.9 +exceptiongroup==1.3.0 ; python_full_version < '3.11' +filelock==3.18.0 +fsspec==2025.5.1 +hf-xet==1.1.2 ; platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'arm64' or platform_machine == 'x86_64' +huggingface-hub==0.32.3 +identify==2.6.12 +idna==3.10 +iniconfig==2.1.0 +license-expression==30.4.1 +markdown-it-py==3.0.0 +mdurl==0.1.2 +msgpack==1.1.0 +mypy==1.16.0 +mypy-extensions==1.1.0 +nodeenv==1.9.1 +packageurl-python==0.16.0 +packaging==25.0 +pathspec==0.12.1 +pip==25.1.1 +pip-api==0.0.34 +pip-audit==2.9.0 +pip-requirements-parser==32.0.1 +platformdirs==4.3.8 +pluggy==1.6.0 +pre-commit==3.8.0 +py-serializable==2.0.0 +pygments==2.19.1 +pyparsing==3.2.3 +pytest==7.4.4 +pytest-cov==4.1.0 +pytest-randomly==3.16.0 +pyyaml==6.0.2 +requests==2.32.3 +rich==14.0.0 +ruff==0.11.12 +sortedcontainers==2.4.0 +toml==0.10.2 +tomli==2.2.1 ; python_full_version <= '3.11' +tqdm==4.67.1 +typing-extensions==4.13.2 +urllib3==2.4.0 +virtualenv==20.31.2 +xdoctest==1.2.0 diff --git a/requirements.txt b/requirements.txt index cfc5b09a68217c6eba8d711a8c995c765049d339..8865f6d5059b341d59b57fa57d743fd44db605dc 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1 +1,25 @@ -huggingface_hub==0.25.2 \ No newline at end of file +# This file was autogenerated by uv via the following command: +# uv export --format requirements-txt --no-hashes --no-dev -o requirements.txt +certifi==2025.4.26 +charset-normalizer==3.4.2 +colorama==0.4.6 ; sys_platform == 'win32' +coverage==7.8.2 +exceptiongroup==1.3.0 ; python_full_version < '3.11' +filelock==3.18.0 +fsspec==2025.5.1 +hf-xet==1.1.2 ; platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'arm64' or 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