evaluation/benchmarks/biocoder/scripts/setup/remove_code.py

import argparse
import os
import re
from collections import defaultdict


def get_likely_indent_size(array_of_tabs) -> int:
    sizes = defaultdict(int)

    for i in range(len(array_of_tabs) - 1):
        diff = array_of_tabs[i + 1] - array_of_tabs[i]
        if diff > 0:
            sizes[diff] += 1
    if len(sizes) == 0:
        return 4
    return int(max(sizes, key=sizes.get))


def get_target_filepath(self):
    target_filepath = os.path.join(
        self.workspace_mount_path,
        self.biocoder_instance.repository.split('/')[1],
        self.biocoder_instance.filePath,
    )
    return target_filepath


def remove_code(target_filepath: str, line_start: int, line_end: int, language: str):
    comment_prefix = {'python': '#', 'java': '//'}

    with open(target_filepath, 'r') as f:
        lines = f.read().split('\n')
        # print("="*10+"ORIGINAL"+"="*10)
        # print("\n".join(lines))
        signature_line = lines[line_start - 1]

        # get the number of tabs
        def get_indent_size(s: str):
            return len(re.match(r'\s*', s).group())

        indent_sizes = list(map(get_indent_size, lines))
        indent_size = get_likely_indent_size(indent_sizes)
        comment_indent_size = get_indent_size(signature_line) + indent_size
        lines = (
            lines[:line_start]
            + [
                f'{" " * comment_indent_size + comment_prefix[language.lower()]}TODO: replace with your code here'
            ]
            + ([''] * 2)
            + lines[line_end:]
        )
    first_line_after_removed_index = line_start
    while len(
        lines[first_line_after_removed_index].strip()
    ) == 0 and first_line_after_removed_index < len(lines):
        first_line_after_removed_index += 1

    first_line_after_removed = lines[first_line_after_removed_index]
    print('FIRST LINE AFTER REMOVED: ', first_line_after_removed)
    with open('/testing_files/first_line_after_removed.txt', 'w') as f:
        f.write(first_line_after_removed)

    with open(target_filepath, 'w') as f:
        f.write('\n'.join(lines))


if __name__ == '__main__':
    parser = argparse.ArgumentParser()
    parser.add_argument('--target_filepath', type=str, required=True)
    parser.add_argument('--line_start', type=int, required=True)
    parser.add_argument('--line_end', type=int, required=True)
    parser.add_argument('--language', type=str, required=True)
    args = parser.parse_args()
    remove_code(args.target_filepath, args.line_start, args.line_end, args.language)