restored to original
Browse filesadded the support for the gpt-4o-mini
app.py
CHANGED
|
@@ -1,10 +1,13 @@
|
|
| 1 |
import os
|
| 2 |
import warnings
|
| 3 |
from typing import *
|
| 4 |
-
from
|
| 5 |
-
from
|
| 6 |
|
| 7 |
from langgraph.checkpoint.memory import MemorySaver
|
|
|
|
|
|
|
|
|
|
| 8 |
|
| 9 |
from interface import create_demo
|
| 10 |
from medrax.agent import *
|
|
@@ -12,6 +15,8 @@ from medrax.tools import *
|
|
| 12 |
from medrax.utils import *
|
| 13 |
|
| 14 |
warnings.filterwarnings("ignore")
|
|
|
|
|
|
|
| 15 |
|
| 16 |
def initialize_agent(
|
| 17 |
prompt_file,
|
|
@@ -19,11 +24,27 @@ def initialize_agent(
|
|
| 19 |
model_dir="./model-weights",
|
| 20 |
temp_dir="temp",
|
| 21 |
device="cuda",
|
|
|
|
| 22 |
temperature=0.7,
|
| 23 |
-
top_p=0.95
|
|
|
|
| 24 |
):
|
| 25 |
-
"""Initialize the MedRAX agent with specified tools and configuration.
|
| 26 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27 |
prompts = load_prompts_from_file(prompt_file)
|
| 28 |
prompt = prompts["MEDICAL_ASSISTANT"]
|
| 29 |
|
|
@@ -45,6 +66,7 @@ def initialize_agent(
|
|
| 45 |
"DicomProcessorTool": lambda: DicomProcessorTool(temp_dir=temp_dir),
|
| 46 |
}
|
| 47 |
|
|
|
|
| 48 |
tools_dict = {}
|
| 49 |
tools_to_use = tools_to_use or all_tools.keys()
|
| 50 |
for tool_name in tools_to_use:
|
|
@@ -52,24 +74,7 @@ def initialize_agent(
|
|
| 52 |
tools_dict[tool_name] = all_tools[tool_name]()
|
| 53 |
|
| 54 |
checkpointer = MemorySaver()
|
| 55 |
-
|
| 56 |
-
# Load local Hugging Face model
|
| 57 |
-
hf_model_id = model_id = "HuggingFaceH4/zephyr-7b-alpha"
|
| 58 |
-
tokenizer = AutoTokenizer.from_pretrained(hf_model_id)
|
| 59 |
-
raw_model = AutoModelForCausalLM.from_pretrained(hf_model_id, device_map="auto")
|
| 60 |
-
|
| 61 |
-
pipe = pipeline(
|
| 62 |
-
"text-generation",
|
| 63 |
-
model=raw_model,
|
| 64 |
-
tokenizer=tokenizer,
|
| 65 |
-
max_new_tokens=512,
|
| 66 |
-
temperature=temperature,
|
| 67 |
-
top_p=top_p,
|
| 68 |
-
return_full_text=False,
|
| 69 |
-
)
|
| 70 |
-
|
| 71 |
-
model = HuggingFacePipeline(pipeline=pipe)
|
| 72 |
-
|
| 73 |
agent = Agent(
|
| 74 |
model,
|
| 75 |
tools=list(tools_dict.values()),
|
|
@@ -82,10 +87,15 @@ def initialize_agent(
|
|
| 82 |
print("Agent initialized")
|
| 83 |
return agent, tools_dict
|
| 84 |
|
| 85 |
-
|
| 86 |
if __name__ == "__main__":
|
|
|
|
|
|
|
|
|
|
|
|
|
| 87 |
print("Starting server...")
|
| 88 |
|
|
|
|
|
|
|
| 89 |
selected_tools = [
|
| 90 |
"ImageVisualizerTool",
|
| 91 |
"DicomProcessorTool",
|
|
@@ -98,15 +108,26 @@ if __name__ == "__main__":
|
|
| 98 |
# "ChestXRayGeneratorTool",
|
| 99 |
]
|
| 100 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 101 |
agent, tools_dict = initialize_agent(
|
| 102 |
"medrax/docs/system_prompts.txt",
|
| 103 |
tools_to_use=selected_tools,
|
| 104 |
-
model_dir="./model-weights",
|
| 105 |
-
temp_dir="temp",
|
| 106 |
-
device="cuda",
|
|
|
|
| 107 |
temperature=0.7,
|
| 108 |
-
top_p=0.95
|
|
|
|
| 109 |
)
|
| 110 |
-
|
| 111 |
demo = create_demo(agent, tools_dict)
|
|
|
|
|
|
|
| 112 |
demo.launch(debug=True, ssr_mode=False)
|
|
|
|
| 1 |
import os
|
| 2 |
import warnings
|
| 3 |
from typing import *
|
| 4 |
+
from dotenv import load_dotenv
|
| 5 |
+
from transformers import logging
|
| 6 |
|
| 7 |
from langgraph.checkpoint.memory import MemorySaver
|
| 8 |
+
from langchain_openai import ChatOpenAI
|
| 9 |
+
from langgraph.checkpoint.memory import MemorySaver
|
| 10 |
+
from langchain_openai import ChatOpenAI
|
| 11 |
|
| 12 |
from interface import create_demo
|
| 13 |
from medrax.agent import *
|
|
|
|
| 15 |
from medrax.utils import *
|
| 16 |
|
| 17 |
warnings.filterwarnings("ignore")
|
| 18 |
+
logging.set_verbosity_error()
|
| 19 |
+
_ = load_dotenv()
|
| 20 |
|
| 21 |
def initialize_agent(
|
| 22 |
prompt_file,
|
|
|
|
| 24 |
model_dir="./model-weights",
|
| 25 |
temp_dir="temp",
|
| 26 |
device="cuda",
|
| 27 |
+
model="gpt-4o-mini",
|
| 28 |
temperature=0.7,
|
| 29 |
+
top_p=0.95,
|
| 30 |
+
openai_kwargs={}
|
| 31 |
):
|
| 32 |
+
"""Initialize the MedRAX agent with specified tools and configuration.
|
| 33 |
+
|
| 34 |
+
Args:
|
| 35 |
+
prompt_file (str): Path to file containing system prompts
|
| 36 |
+
tools_to_use (List[str], optional): List of tool names to initialize. If None, all tools are initialized.
|
| 37 |
+
model_dir (str, optional): Directory containing model weights. Defaults to "/model-weights".
|
| 38 |
+
temp_dir (str, optional): Directory for temporary files. Defaults to "temp".
|
| 39 |
+
device (str, optional): Device to run models on. Defaults to "cuda".
|
| 40 |
+
model (str, optional): Model to use. Defaults to "chatgpt-4o-latest".
|
| 41 |
+
temperature (float, optional): Temperature for the model. Defaults to 0.7.
|
| 42 |
+
top_p (float, optional): Top P for the model. Defaults to 0.95.
|
| 43 |
+
openai_kwargs (dict, optional): Additional keyword arguments for OpenAI API, such as API key and base URL.
|
| 44 |
+
|
| 45 |
+
Returns:
|
| 46 |
+
Tuple[Agent, Dict[str, BaseTool]]: Initialized agent and dictionary of tool instances
|
| 47 |
+
"""
|
| 48 |
prompts = load_prompts_from_file(prompt_file)
|
| 49 |
prompt = prompts["MEDICAL_ASSISTANT"]
|
| 50 |
|
|
|
|
| 66 |
"DicomProcessorTool": lambda: DicomProcessorTool(temp_dir=temp_dir),
|
| 67 |
}
|
| 68 |
|
| 69 |
+
# Initialize only selected tools or all if none specified
|
| 70 |
tools_dict = {}
|
| 71 |
tools_to_use = tools_to_use or all_tools.keys()
|
| 72 |
for tool_name in tools_to_use:
|
|
|
|
| 74 |
tools_dict[tool_name] = all_tools[tool_name]()
|
| 75 |
|
| 76 |
checkpointer = MemorySaver()
|
| 77 |
+
model = ChatOpenAI(model=model, temperature=temperature, top_p=top_p, **openai_kwargs)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 78 |
agent = Agent(
|
| 79 |
model,
|
| 80 |
tools=list(tools_dict.values()),
|
|
|
|
| 87 |
print("Agent initialized")
|
| 88 |
return agent, tools_dict
|
| 89 |
|
|
|
|
| 90 |
if __name__ == "__main__":
|
| 91 |
+
"""
|
| 92 |
+
This is the main entry point for the MedRAX application.
|
| 93 |
+
It initializes the agent with the selected tools and creates the demo.
|
| 94 |
+
"""
|
| 95 |
print("Starting server...")
|
| 96 |
|
| 97 |
+
# Example: initialize with only specific tools
|
| 98 |
+
# Here three tools are commented out, you can uncomment them to use them
|
| 99 |
selected_tools = [
|
| 100 |
"ImageVisualizerTool",
|
| 101 |
"DicomProcessorTool",
|
|
|
|
| 108 |
# "ChestXRayGeneratorTool",
|
| 109 |
]
|
| 110 |
|
| 111 |
+
# Collect the ENV variables
|
| 112 |
+
openai_kwargs = {}
|
| 113 |
+
if api_key := os.getenv("OPENAI_API_KEY"):
|
| 114 |
+
openai_kwargs["api_key"] = api_key
|
| 115 |
+
|
| 116 |
+
if base_url := os.getenv("OPENAI_BASE_URL"):
|
| 117 |
+
openai_kwargs["base_url"] = base_url
|
| 118 |
+
|
| 119 |
agent, tools_dict = initialize_agent(
|
| 120 |
"medrax/docs/system_prompts.txt",
|
| 121 |
tools_to_use=selected_tools,
|
| 122 |
+
model_dir="./model-weights", # Change this to the path of the model weights
|
| 123 |
+
temp_dir="temp", # Change this to the path of the temporary directory
|
| 124 |
+
device="cuda", # Change this to the device you want to use
|
| 125 |
+
model="gpt-4o-mini", # Change this to the model you want to use, e.g. gpt-4o-mini
|
| 126 |
temperature=0.7,
|
| 127 |
+
top_p=0.95,
|
| 128 |
+
openai_kwargs=openai_kwargs
|
| 129 |
)
|
|
|
|
| 130 |
demo = create_demo(agent, tools_dict)
|
| 131 |
+
|
| 132 |
+
# demo.launch(server_name="0.0.0.0", server_port=8585, share=True)
|
| 133 |
demo.launch(debug=True, ssr_mode=False)
|