biomap/app.py

from plot_functions import *
import hydra

import torch
from model import LitUnsupervisedSegmenter
from helper import inference_on_location_and_month, inference_on_location
from plot_functions import segment_region

from functools import partial
import gradio as gr
import logging

import geopandas as gpd
mapbox_access_token = "pk.eyJ1IjoiamVyZW15LWVraW1ldHJpY3MiLCJhIjoiY2xrNjBwNGU2MDRhMjNqbWw0YTJrbnpvNCJ9.poVyIzhJuJmD6ffrL9lm2w"
geo_df = gpd.read_file(gpd.datasets.get_path('naturalearth_cities'))

def get_geomap(long, lat ):
    

    fig = go.Figure(go.Scattermapbox(
            lat=geo_df.geometry.y,
            lon=geo_df.geometry.x,
            mode='markers',
            marker=go.scattermapbox.Marker(
                size=14
            ),
            text=geo_df.name,
        ))
    
    fig.add_trace(go.Scattermapbox(lat=[lat],
        lon=[long],
        mode='markers',
        marker=go.scattermapbox.Marker(
            size=14
        ),
        marker_color="green",
        text=['Actual position']))

    fig.update_layout(
        showlegend=False,
        hovermode='closest',
        mapbox=dict(
            accesstoken=mapbox_access_token,
            center=go.layout.mapbox.Center(
                lat=lat,
                lon=long
            ),
            zoom=3
        )
    )
    
    return fig


if __name__ == "__main__":
    
    
    logging.basicConfig(filename='example.log', encoding='utf-8', level=logging.INFO)
    # Initialize hydra with configs
    #hydra.initialize(config_path="configs", job_name="corine")
    cfg = hydra.compose(config_name="my_train_config.yml")
    logging.info(f"config : {cfg}")
    # Load the model

    nbclasses = cfg.dir_dataset_n_classes
    model = LitUnsupervisedSegmenter(nbclasses, cfg)
    logging.info(f"Model Initialiazed")
    
    model_path = "checkpoint/model/model.pt"
    saved_state_dict = torch.load(model_path, map_location=torch.device("cpu"))
    logging.info(f"Model weights Loaded")
    model.load_state_dict(saved_state_dict)
    logging.info(f"Model Loaded")
# css=".VIDEO video{height: 100%;width:50%;margin:auto};.VIDEO{height: 50%;};.svelte-1vnmhm4{height:auto}"
    with gr.Blocks() as demo:
        gr.Markdown("Estimate Biodiversity in the world.")
        with gr.Tab("Single Image"):
            with gr.Row():
                input_map = gr.Plot().style()  
                with gr.Column():
                    input_latitude = gr.Number(label="lattitude", value=2.98)
                    input_longitude = gr.Number(label="longitude", value=48.81)
                    input_date = gr.Textbox(label="start_date", value="2020-03-20")

            single_button = gr.Button("Predict")
            with gr.Row():
                raw_image = gr.Image(label = "Localisation visualization")
                output_image = gr.Image(label = "Labeled visualisation")
                score_biodiv = gr.Number(label = "Biodiversity score")

        with gr.Tab("TimeLapse"):
            with gr.Row():
                input_map_2 = gr.Plot().style() 
            with gr.Row():
                timelapse_input_latitude = gr.Number(value=2.98, label="Latitude")
                timelapse_input_longitude = gr.Number(value=48.81, label="Longitude")
                timelapse_start_date = gr.Textbox(value='2020-05-01', label="Start Date")
                timelapse_end_date = gr.Textbox(value='2020-06-30', label="End Date")
            segmentation = gr.CheckboxGroup(choices=['month', 'year', '2months'], value=['month'], label="Select Segmentation Level:")
            timelapse_button = gr.Button(value="Predict")     
            map = gr.Plot().style()
        
        demo.load(get_geomap, [input_latitude, input_longitude], input_map)
        single_button.click(get_geomap, [input_latitude, input_longitude], input_map)
        single_button.click(partial(inference_on_location_and_month, model), inputs=[input_latitude, input_longitude, input_date], outputs=[raw_image, output_image,score_biodiv])

        demo.load(get_geomap, [timelapse_input_latitude, timelapse_input_longitude], input_map_2)
        timelapse_button.click(get_geomap, [timelapse_input_latitude, timelapse_input_longitude], input_map_2)
        timelapse_button.click(segment_region, inputs=[timelapse_input_latitude, timelapse_input_longitude, timelapse_start_date, timelapse_end_date,segmentation], outputs=[map])
    demo.launch(share=True)