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Runtime error
Runtime error
Commit
·
fadf40f
1
Parent(s):
a19b9c3
add: a basic streamlit app impl for gui
Browse files- app.py +87 -0
- pyproject.toml +11 -5
app.py
ADDED
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@@ -0,0 +1,87 @@
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import streamlit as st
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import weave
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from dotenv import load_dotenv
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from medrag_multi_modal.assistant import (
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FigureAnnotatorFromPageImage,
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LLMClient,
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MedQAAssistant,
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)
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from medrag_multi_modal.retrieval import MedCPTRetriever
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# Load environment variables
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load_dotenv()
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# Sidebar for configuration settings
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st.sidebar.title("Configuration Settings")
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project_name = st.sidebar.text_input(
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"Project Name",
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"ml-colabs/medrag-multi-modal"
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)
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chunk_dataset_name = st.sidebar.text_input(
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"Text Chunk WandB Dataset Name",
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"grays-anatomy-chunks:v0"
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)
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index_artifact_address = st.sidebar.text_input(
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"WandB Index Artifact Address",
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"ml-colabs/medrag-multi-modal/grays-anatomy-medcpt:v0",
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)
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image_artifact_address = st.sidebar.text_input(
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"WandB Image Artifact Address",
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"ml-colabs/medrag-multi-modal/grays-anatomy-images-marker:v6",
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)
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llm_model_name = st.sidebar.text_input(
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"LLM Client Model Name",
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"gemini-1.5-flash"
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)
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figure_extraction_model_name = st.sidebar.text_input(
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"Figure Extraction Model Name",
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"pixtral-12b-2409"
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)
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structured_output_model_name = st.sidebar.text_input(
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"Structured Output Model Name",
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"gpt-4o"
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)
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# Initialize Weave
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weave.init(project_name=project_name)
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# Initialize clients and assistants
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llm_client = LLMClient(model_name=llm_model_name)
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retriever = MedCPTRetriever.from_wandb_artifact(
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chunk_dataset_name=chunk_dataset_name,
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index_artifact_address=index_artifact_address,
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)
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figure_annotator = FigureAnnotatorFromPageImage(
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figure_extraction_llm_client=LLMClient(model_name=figure_extraction_model_name),
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structured_output_llm_client=LLMClient(model_name=structured_output_model_name),
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image_artifact_address=image_artifact_address,
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)
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medqa_assistant = MedQAAssistant(
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llm_client=llm_client, retriever=retriever, figure_annotator=figure_annotator
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)
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# Streamlit app layout
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st.title("MedQA Assistant App")
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# Initialize chat history
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if "chat_history" not in st.session_state:
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st.session_state.chat_history = []
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# Display chat messages from history on app rerun
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for message in st.session_state.chat_history:
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with st.chat_message(message["role"]):
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st.markdown(message["content"])
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# Chat thread section with user input and response
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if query := st.chat_input("What medical question can I assist you with today?"):
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# Add user message to chat history
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st.session_state.chat_history.append({"role": "user", "content": query})
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with st.chat_message("user"):
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st.markdown(query)
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# Process query and get response
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response = medqa_assistant.predict(query=query)
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st.session_state.chat_history.append({"role": "assistant", "content": response})
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with st.chat_message("assistant"):
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st.markdown(response)
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pyproject.toml
CHANGED
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@@ -44,9 +44,13 @@ dependencies = [
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"jsonlines>=4.0.0",
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"opencv-python>=4.10.0.84",
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"openai>=1.52.2",
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]
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[project.optional-dependencies]
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core = [
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"adapters>=1.0.0",
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"bm25s[full]>=0.2.2",
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"opencv-python>=4.10.0.84",
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"openai>=1.52.2",
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]
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-
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docs = [
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"mkdocs>=1.6.1",
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"mkdocstrings>=0.26.1",
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[tool.pytest.ini_options]
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-
pythonpath = "."
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"jsonlines>=4.0.0",
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"opencv-python>=4.10.0.84",
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"openai>=1.52.2",
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"streamlit>=1.39.0",
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]
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[project.optional-dependencies]
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app = [
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"streamlit>=1.39.0",
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]
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core = [
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"adapters>=1.0.0",
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"bm25s[full]>=0.2.2",
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"opencv-python>=4.10.0.84",
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"openai>=1.52.2",
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]
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dev = [
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"pytest>=8.3.3",
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"isort>=5.13.2",
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"black>=24.10.0",
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"ruff>=0.6.9",
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]
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docs = [
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"mkdocs>=1.6.1",
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"mkdocstrings>=0.26.1",
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[tool.pytest.ini_options]
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pythonpath = "."
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