Spaces:
Runtime error
Runtime error
Commit
·
0c8af8a
1
Parent(s):
7e647be
main welcome text added with link to family of models
Browse files
app.py
CHANGED
|
@@ -9,6 +9,18 @@ from mammal_demo.ppi_task import PpiTask
|
|
| 9 |
from mammal_demo.ps_task import PsTask
|
| 10 |
from mammal_demo.tcr_task import TcrTask
|
| 11 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 12 |
all_tasks = TaskRegistry()
|
| 13 |
all_models = ModelRegistry()
|
| 14 |
|
|
@@ -40,13 +52,13 @@ all_models.register_model(
|
|
| 40 |
task_list=[ppi_task],
|
| 41 |
)
|
| 42 |
all_models.register_model(
|
| 43 |
-
"
|
| 44 |
)
|
| 45 |
all_models.register_model(
|
| 46 |
-
"
|
| 47 |
)
|
| 48 |
all_models.register_model(
|
| 49 |
-
"
|
| 50 |
)
|
| 51 |
|
| 52 |
|
|
@@ -73,6 +85,7 @@ def create_application():
|
|
| 73 |
)
|
| 74 |
|
| 75 |
with gr.Blocks(theme="Zarkel/IBM_Carbon_Theme") as application:
|
|
|
|
| 76 |
task_dropdown = gr.Dropdown(
|
| 77 |
choices=["Select task"] + list(all_tasks.keys()),
|
| 78 |
label="Mammal Task",
|
|
|
|
| 9 |
from mammal_demo.ps_task import PsTask
|
| 10 |
from mammal_demo.tcr_task import TcrTask
|
| 11 |
|
| 12 |
+
MAIN_MARKDOWN_TEXT = """
|
| 13 |
+
|
| 14 |
+
The **[ibm/biomed.omics.bl.sm.ma-ted-458m](https://huggingface.co/models?sort=trending&search=ibm%2Fbiomed.omics.bl)** model family is a biomedical foundation model and its finetuned variants trained on over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.
|
| 15 |
+
Designed for robust performance, it achieves state-of-the-art results over a variety of tasks across the entire drug discovery pipeline and the diverse biomedical domains.
|
| 16 |
+
|
| 17 |
+
Based on the **M**olecular **A**ligned **M**ulti-**M**odal **A**rchitecture and **L**anguage (**MAMMAL**), a flexible, multi-domain architecture with an adaptable task prompt syntax.
|
| 18 |
+
The syntax allows for dynamic combinations of tokens and scalars, enabling classification, regression, and generation tasks either within a single domain or with cross-domain entities.
|
| 19 |
+
|
| 20 |
+
This page demonstraits a variety of drug discovery and biomedical tasks for the model family. Select the task to access the specific demos.
|
| 21 |
+
"""
|
| 22 |
+
|
| 23 |
+
|
| 24 |
all_tasks = TaskRegistry()
|
| 25 |
all_models = ModelRegistry()
|
| 26 |
|
|
|
|
| 52 |
task_list=[ppi_task],
|
| 53 |
)
|
| 54 |
all_models.register_model(
|
| 55 |
+
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_tox"
|
| 56 |
)
|
| 57 |
all_models.register_model(
|
| 58 |
+
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_clintox_fda"
|
| 59 |
)
|
| 60 |
all_models.register_model(
|
| 61 |
+
"ibm/biomed.omics.bl.sm.ma-ted-458m.moleculenet_bbbp"
|
| 62 |
)
|
| 63 |
|
| 64 |
|
|
|
|
| 85 |
)
|
| 86 |
|
| 87 |
with gr.Blocks(theme="Zarkel/IBM_Carbon_Theme") as application:
|
| 88 |
+
application_main_markdown=gr.Markdown(MAIN_MARKDOWN_TEXT)
|
| 89 |
task_dropdown = gr.Dropdown(
|
| 90 |
choices=["Select task"] + list(all_tasks.keys()),
|
| 91 |
label="Mammal Task",
|