Spaces:
Running
Running
Fix docstrings.
Browse files
lynxkite-bio/src/lynxkite_bio/__init__.py
CHANGED
|
@@ -1,4 +1,4 @@
|
|
| 1 |
-
"""
|
| 2 |
|
| 3 |
from lynxkite_graph_analytics import Bundle, RelationDefinition
|
| 4 |
from lynxkite.core import ops
|
|
@@ -39,6 +39,7 @@ def _get_similarity_matrix(mols):
|
|
| 39 |
def graph_from_similarity(
|
| 40 |
bundle: Bundle, *, table="df", mols_column="mols", average_degree=10
|
| 41 |
):
|
|
|
|
| 42 |
df = bundle.dfs[table]
|
| 43 |
mols = df[mols_column]
|
| 44 |
similarity_matrix = _get_similarity_matrix(mols)
|
|
|
|
| 1 |
+
"""An expansion for `lynxkite-graph-analytics` that provides algorithms for biological applications."""
|
| 2 |
|
| 3 |
from lynxkite_graph_analytics import Bundle, RelationDefinition
|
| 4 |
from lynxkite.core import ops
|
|
|
|
| 39 |
def graph_from_similarity(
|
| 40 |
bundle: Bundle, *, table="df", mols_column="mols", average_degree=10
|
| 41 |
):
|
| 42 |
+
"""Creates edges for pairs of molecules that are the most similar."""
|
| 43 |
df = bundle.dfs[table]
|
| 44 |
mols = df[mols_column]
|
| 45 |
similarity_matrix = _get_similarity_matrix(mols)
|