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configs/default.yaml
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seed: 42
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device: "auto"
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feature_backend:
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type: "plm"
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plm_model_name: "facebook/esm1v_t33_650M_UR90S_1"
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layer_pool: "mean"
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cache_dir: ".cache/embeddings"
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descriptors:
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use_anarci: true
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regions:
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- "CDRH1"
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- "CDRH2"
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- "CDRH3"
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features:
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- "length"
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- "charge"
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- "hydropathy"
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- "aromaticity"
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- "pI"
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- "net_charge"
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model:
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head: "logreg"
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C: 0.1
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class_weight: "balanced"
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calibration:
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method: "isotonic"
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training:
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cv_folds: 10
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scoring: "roc_auc"
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n_jobs: -1
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io:
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outputs_dir: "artifacts"
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preds_filename: "preds.csv"
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metrics_filename: "metrics.csv"
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