Datasets Archive
Collection
Data produced relating to model train/test cycles which have been archived - due to data versioning or priorities changing
•
6 items
•
Updated
PMCID
string | Sentences
string | ner
list |
|---|---|---|
PMC11371747
|
Interestingly, with the least sensitive cell line, LS174T, potentiation by dl-LV was more pronounced than with l-LV alone.
|
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PMC11695546
|
Unique and potent antimicrobial medications for the management of biofilms have been appeared in response to the growing crisis of antibiotic resistance and formation of biofilms of bacteria.
|
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PMC9429973
|
In particular, there was a trend towards higher frequency, but reduced intensity of pain crisis in patients with SC disease, but this did not reach significance.
|
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PMC10135767
|
Initially, a coating zone (25 mm) covered with clean silicon rubber was designated at the center of each cover slide (Thermo Fisher Scientific, Shanghai, China).
|
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PMC11802929
|
We explored this concept by projecting each cell’s antigen specificity (Pep-Groups) onto the GEX-UMAP (Fig. 4d top).
|
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PMC6600253
|
However, TNKS1 can induce poly ADP-ribosylation of TRF1, which dissociates TRF1 from telomeric DNA, and results in the exposure of the telomere to telomerase and the promotion of telomere elongation .
|
[
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}
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PMC11653552
|
In vitro studies on human adipose-derived stem cells (ADSC1 and ADSC2) confirmed that osteogenic differentiation is linked to enhanced mineralization and upregulation of osteoblast markers, with increased TAZ expression and decreased Che-1 and miR-590-3p during differentiation.
|
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PMC11397654
|
It has already been demonstrated that calixarene derivatives can be biologically or pharmacologically active compounds.
|
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PMC11775197
|
PPARβ/δ is widely distributed in various tissues, with the highest expression levels observed in colonic epithelial cells, skin, and adipocytes.
|
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}
] |
PMC9429973
|
Probability of OS was significantly higher in the low-mEASIX group compared to high-mEASIX group (37% vs 25.2%; p=0.008; HR: 2.057; 95% CI: 1.208-3.504).
|
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PMC9436459
|
The synthesis featured an enzymatic intermolecular [4 + 2] cycloaddition of different substrates to produce the natural MDAAs and their derivates with a high efficiency and enantioselectivity.
|
[
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PMC11680562
|
Table 3Physicochemical characteristics of the PXFCu gelFormulation codeAppearanceHomogeneitypHSpreadability (cm)PXFCu1Translucent blackGood4.1 ± 0.136.9 ± 0.16PXFCu2Translucent blackGood4.2 ± 0.076.5 ± 0.12PXFCu3Translucent blackGood4.5 ± 0.116.5 ± 0.16PXFCu4Translucent blackVery Good4.2 ± 0.116.4 ± 0.22PXFCu5Translucent blackGood4.5 ± 0.146.4 ± 0.08PXFCu6Translucent blackVery Good4.6 ± 0.186.1 ± 0.16(n = 3), Data represented as mean ± S.D Physicochemical characteristics of the PXFCu gel (n = 3), Data represented as mean ± S.D The drug excipient compatibility investigation used FTIR analysis, a prevalent method for evaluating chemical interactions among various constituents.
|
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PMC11706776
|
These results were confirmed by comparing KCNN1, KCNN2, and KCNN3 expression in seven ES and six OS cell lines (GSE229906, Supplementary Fig. 1E, F).
|
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] |
PMC10919056
|
OS analysis results in the testing set. (
|
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PMC9429973
|
Results: Median age at diagnosis was 68 years (range, 24-88) and 146 pts (60%) were male.
|
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] |
PMC9429973
|
At TP3 and TP4 Nabs showed a significant decrease but remained in protective levels for the majority of the patients (mean 88.75% ±9.7 and 74.64% ±17.2 respectively(p<0.0001).
|
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]
}
] |
PMC11468365
|
After capturing the two tasks’ relationship features, the prediction scores are learned by a prediction subnetwork.
|
[
{
"tags": [
"O",
"O",
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"O",
"O",
"O",
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}
] |
PMC11740907
|
In the time-course investigation, samples and a buffer solution containing 1 mm EDTA and 300 mm NaOH at a pH of 13 were placed in horizontally oriented electrophoretic-agarose chambers.
|
[
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"oriented",
"electrophoretic-agarose",
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]
}
] |
PMC9268620
|
Lymphoid precursor cells, namely lymphoblasts, that undergo cell cycle arrest during early cancer development become the precursor malignant cells for lymphoblastic leukemia .
|
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"cells",
"for",
"lymphoblastic",
"leukemia",
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]
}
] |
PMC7215832
|
Hyper-methylation of tumor-suppressor gene (TSG) promoters is known to have implications in cancer progression and is of therapeutic interest, as hypermethylation of TSG promoters causes suppression of gene transcription and silencing of TSGs whereas CpG demethylation results in TSG transcriptional activation .
|
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"O",
"O",
"O",
"O"
],
"tokens": [
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"tumor-suppressor",
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"demethylation",
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"TSG",
"transcriptional",
"activation",
"."
]
}
] |
PMC6442998
|
PDE3A, but not PDE3B, mRNA level was lower in GIST48 compared to GIST882 cells (Figure 2A).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"Figure",
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")",
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]
}
] |
PMC11252033
|
Here, we investigated the role of CryZ as a novel therapeutic target in A2780 ovarian carcinoma cells by modulating the protein activity with acetylsalicylic acid (ASA) to restore chemosensitivity.
|
[
{
"tags": [
"O",
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"O",
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"O",
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"O",
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"O",
"O",
"O",
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"ASA",
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"to",
"restore",
"chemosensitivity",
"."
]
}
] |
PMC9341513
|
The chromatin concentration is roughly matched to that of a typical nucleus.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"chromatin",
"concentration",
"is",
"roughly",
"matched",
"to",
"that",
"of",
"a",
"typical",
"nucleus",
"."
]
}
] |
PMC9919300
|
The most significative differences, shown by comparison between the treated and nontreated groups, reported in Figure 5, evidenced that the chosen treatments were effective in regulate key genes in hepatic lipid content and homeostasis.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"regulate",
"key",
"genes",
"in",
"hepatic",
"lipid",
"content",
"and",
"homeostasis",
"."
]
}
] |
PMC2614416
|
Oxidoreductase enzymes are extremely diverse in their structures, functions, cellular distribution and biochemical transformations they mediate.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"Oxidoreductase",
"enzymes",
"are",
"extremely",
"diverse",
"in",
"their",
"structures",
",",
"functions",
",",
"cellular",
"distribution",
"and",
"biochemical",
"transformations",
"they",
"mediate",
"."
]
}
] |
PMC10778532
|
We attempted to analyze the consequences of the VHL-C162F mutation in ccRCCs using the clear-cell renal carcinoma 786-0 cells (VHL−/−) transfected with either empty (EV), WT VHL, or VHL-C162F encoding vectors.
|
[
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
"I-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"EV",
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",",
"WT",
"VHL",
",",
"or",
"VHL-C162F",
"encoding",
"vectors",
"."
]
}
] |
PMC10607604
|
VCP, a PTPN13 substrate , plays an important role in the regulation of DNA damage repair , although the effect of its dephosphorylation by PTPN13 remains unknown (for review, ).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"a",
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"although",
"the",
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"of",
"its",
"dephosphorylation",
"by",
"PTPN13",
"remains",
"unknown",
"(",
"for",
"review",
",",
")",
"."
]
}
] |
PMC11733919
|
This approach would allow one to document whether CD26 levels are affected in different senescent cell types using different senescence-inducing conditions and to test whether CD26 can be considered as a more common or more private marker of senescence (universal or unique marker of senescence, respectively).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"This",
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"would",
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"marker",
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"(",
"universal",
"or",
"unique",
"marker",
"of",
"senescence",
",",
"respectively",
")",
"."
]
}
] |
PMC7709199
|
For murine IL-12B, the reference sequence (NM_001303244.1) encoding the full-length protein (residues Met1–Ser335) was synthesized by GeneArt and was a kind gift from Complix n.v.,
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"IL-12B",
",",
"the",
"reference",
"sequence",
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"NM_001303244.1",
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"encoding",
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"a",
"kind",
"gift",
"from",
"Complix",
"n.v",
".",
","
]
}
] |
PMC11332076
|
Transient transfection in both cell lines was performed using Polyethylenimine HCl Max (Polyscience).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Transient",
"transfection",
"in",
"both",
"cell",
"lines",
"was",
"performed",
"using",
"Polyethylenimine",
"HCl",
"Max",
"(",
"Polyscience",
")",
"."
]
}
] |
PMC11641630
|
BCG and M. brumae cells were resuspended in sterile phosphate buffered saline (PBS) and adjusted to a 1.0 McFarland turbidity standard as previously described to get the required multiplicity of infection (MOI) for each experiment.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"BCG",
"and",
"M.",
"brumae",
"cells",
"were",
"resuspended",
"in",
"sterile",
"phosphate",
"buffered",
"saline",
"(",
"PBS",
")",
"and",
"adjusted",
"to",
"a",
"1.0",
"McFarland",
"turbidity",
"standard",
"as",
"previously",
"described",
"to",
"get",
"the",
"required",
"multiplicity",
"of",
"infection",
"(",
"MOI",
")",
"for",
"each",
"experiment",
"."
]
}
] |
PMC9429973
|
Females were additionally censored at date of relapse or stem cell transplantation due to the limited accessibility of assisted reproductive techniques for female patients experiencing one of those events.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Females",
"were",
"additionally",
"censored",
"at",
"date",
"of",
"relapse",
"or",
"stem",
"cell",
"transplantation",
"due",
"to",
"the",
"limited",
"accessibility",
"of",
"assisted",
"reproductive",
"techniques",
"for",
"female",
"patients",
"experiencing",
"one",
"of",
"those",
"events",
"."
]
}
] |
PMC9429973
|
The drug response data is integrated with patient-matched serum cytokine profiling, RNA-sequencing, and clinical data, allowing to identify the cellular subpopulations whose functional response is predictive of treatment response.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"drug",
"response",
"data",
"is",
"integrated",
"with",
"patient-matched",
"serum",
"cytokine",
"profiling",
",",
"RNA-sequencing",
",",
"and",
"clinical",
"data",
",",
"allowing",
"to",
"identify",
"the",
"cellular",
"subpopulations",
"whose",
"functional",
"response",
"is",
"predictive",
"of",
"treatment",
"response",
"."
]
}
] |
PMC11757230
|
Representative bioluminescence images on days 7, 14, and 21 showing tumor growth in CLC/fLuc cell xenotransplantation mouse models treated with different doses of cADSCs. (
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Representative",
"bioluminescence",
"images",
"on",
"days",
"7",
",",
"14",
",",
"and",
"21",
"showing",
"tumor",
"growth",
"in",
"CLC/fLuc",
"cell",
"xenotransplantation",
"mouse",
"models",
"treated",
"with",
"different",
"doses",
"of",
"cADSCs",
".",
"("
]
}
] |
PMC5833712
|
The role of KDM6B has been extensively studied in development, cell plasticity, immune system, neurodegenerative disease, and cancer.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"role",
"of",
"KDM6B",
"has",
"been",
"extensively",
"studied",
"in",
"development",
",",
"cell",
"plasticity",
",",
"immune",
"system",
",",
"neurodegenerative",
"disease",
",",
"and",
"cancer",
"."
]
}
] |
PMC10142392
|
In addition to this variation in crystallinity, degradation by bacterial and fungal enzymes is one of the parameters that has highlighted the interest in PCL, making it particularly attractive for biodegradable material applications.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"addition",
"to",
"this",
"variation",
"in",
"crystallinity",
",",
"degradation",
"by",
"bacterial",
"and",
"fungal",
"enzymes",
"is",
"one",
"of",
"the",
"parameters",
"that",
"has",
"highlighted",
"the",
"interest",
"in",
"PCL",
",",
"making",
"it",
"particularly",
"attractive",
"for",
"biodegradable",
"material",
"applications",
"."
]
}
] |
PMC11591794
|
The results from these studies show that GA induces cell death in tumor cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"results",
"from",
"these",
"studies",
"show",
"that",
"GA",
"induces",
"cell",
"death",
"in",
"tumor",
"cells",
"."
]
}
] |
PMC11747467
|
Interestingly, ERBB2 was mainly enriched in the cell clusters expressing GATA3 and FOXA1 ( Supplementary Figure S3F ; Figure 1D ).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Interestingly",
",",
"ERBB2",
"was",
"mainly",
"enriched",
"in",
"the",
"cell",
"clusters",
"expressing",
"GATA3",
"and",
"FOXA1",
"(",
"Supplementary",
"Figure",
"S3F",
";",
"Figure",
"1D",
")",
"."
]
}
] |
PMC10968586
|
Hypoxia increased HT cytotoxicity in MCF-7 cell line, an effect that became evident at 400 μM (vs. 600 μM in normoxic conditions).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Hypoxia",
"increased",
"HT",
"cytotoxicity",
"in",
"MCF-7",
"cell",
"line",
",",
"an",
"effect",
"that",
"became",
"evident",
"at",
"400",
"μM",
"(",
"vs.",
"600",
"μM",
"in",
"normoxic",
"conditions",
")",
"."
]
}
] |
PMC11496491
|
The hybridized chip was scanned by the scanner and the scan map is obtained.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"hybridized",
"chip",
"was",
"scanned",
"by",
"the",
"scanner",
"and",
"the",
"scan",
"map",
"is",
"obtained",
"."
]
}
] |
PMC11758416
|
Optional: Rinse the wells with 1 mL of fresh complete media to maximize cell count.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Optional",
":",
"Rinse",
"the",
"wells",
"with",
"1",
"mL",
"of",
"fresh",
"complete",
"media",
"to",
"maximize",
"cell",
"count",
"."
]
}
] |
PMC11803210
|
Naringenin (Nar) and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (St Louis, MO).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Naringenin",
"(",
"Nar",
")",
"and",
"dimethyl",
"sulfoxide",
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"DMSO",
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"were",
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"St",
"Louis",
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"MO",
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]
}
] |
PMC11740207
|
Disruptions in this mechanism can contribute to malignancies, as uncontrolled SD may lead to an accumulation of undifferentiated cells, increasing the risk of tumorigenesis (Chhabra and Booth, 2021; Bolkent, 2024).
|
[
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PMC11391695
|
Furthermore, the encapsulation of nonviral vector-mediated gene delivery systems in nanomaterials coated with tumor cell membranes can prevent unanticipated losses during transport to the target site, enabling effective local gene therapy while minimizing nonspecific diffusion into other tissues .
|
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PMC11674441
|
Endotoxin and β-glucan levels were measured using a Toxinometer ET-6000 (Wako Pure Chemical Industries, Ltd., Osaka, Japan), while mycoplasma contamination was assessed with a MycoAlert detection assay (Lonza Rockland Inc., Rockland, ME, USA).
|
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PMC11657695
|
Counts were variance stabilized using DESeq2’s rlog transformation function and transformed to z-score.
|
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"O",
"O",
"O",
"O",
"O",
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}
] |
PMC11711127
|
High level of expression of senescence related β-galactosidase has been observed in senescent T cells (85).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
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PMC11026382
|
These structural and biochemical observations are consistent with the finding that mutations with negative epistasis tended to yield moderate to severe growth rate defects.
|
[
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"tags": [
"O",
"O",
"O",
"O",
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] |
PMC10502403
|
Vδ2CD8 NE1-GMCs secrete IFN-γ in response to PTA.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"in",
"response",
"to",
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}
] |
PMC9429973
|
Patients with IL-1RN VNTR non-2-allele carrier genotypes had 1,718-fold increased risk of shorter PFS, but no significant effect on OS was demonstrated.
|
[
{
"tags": [
"O",
"O",
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PMC11752740
|
The combination index (CI) values for effective doses were determined based on different fractions of the cell population, following the principles laid out by Chou and Talalay for assessing drug interactions in combination therapies .
|
[
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"tags": [
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PMC9220170
|
It is well known that CHOP acts as a transcription factor that, in combination with ATF-4, enhances the expression of various genes.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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] |
PMC11730311
|
Positive effects on antagonism of hαCGRP8-37 with C20DA-γGlu compared to C18DA-γGlu protraction could be related to a similar mode of action.
|
[
{
"tags": [
"O",
"O",
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"O",
"O",
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] |
PMC9927933
|
The difference is statistically significant (P = 0.0241) (Figure 2D), indicating that reduced tumor burden upon Ube2c deletion indeed led to better animal survival.
|
[
{
"tags": [
"O",
"O",
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}
] |
PMC11575040
|
%)OSCHR (95% CI)P-valueAHR (95% CI)P-valueLINC00094(n = 458) Low359 (78.4)1.001.00 High99 (21.6)1.41 (1.04–1.91)0.0271.38 (1.02–1.88)0.036AHR were adjusted for AJCC pathological stage (II, III and IV vs. I)Statistical significance (bold): a two-tailed P-value of <0.05DSS disease-specific survival, DFS disease-free survival, CHR crude hazard ratio, AHR adjusted hazard ratio Univariate and multivariate Cox’s regression analysis of LINC00094 expression for overall survival of patients with melanoma AHR were adjusted for AJCC pathological stage (II, III and IV vs. I) Statistical significance (bold): a two-tailed P-value of <0.05 DSS disease-specific survival, DFS disease-free survival, CHR crude hazard ratio, AHR adjusted hazard ratio In this study, we utilized five melanoma cell lines: A375, A2058, C32, RPMI 7951, and MeWo.
|
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"tags": [
"O",
"O",
"O",
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"O",
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"O",
"O",
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PMC11699465
|
We noticed that TMEM199 amplification occurs in multiple cancer types (Figure 1A), including colon cancer, ovarian cancer, sarcoma et al. High TMEM199 expression contributed to worse survival in BLCA, LIHC, and UCEC (Figures 1B–1D).
|
[
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}
] |
PMC9684669
|
Plates were then washed twice with pre-warmed PBS, filled with 100 µl/well PBS, and measured using a Tecan reader at 485 nm excitation and 535 nm emission.
|
[
{
"tags": [
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"emission",
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]
}
] |
PMC11599565
|
It is worth mentioning that the term “mesoderm” is rather ontogenetic, whereas “mesenchyme” is histologic (embryonic connective tissue).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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PMC11684269
|
Methylenetetrahydrofolate dehydrogenase 2 (MTHFD2) is a one-carbon (1C) metabolism enzyme, that is involved in modulating de novo purine synthesis.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"modulating",
"de",
"novo",
"purine",
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}
] |
PMC11766174
|
A total of 2 µL of purified RNA was used as template.
|
[
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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"was",
"used",
"as",
"template",
"."
]
}
] |
PMC8973725
|
The 786–0 cells were seeded in 12-well plates (5 × 10 cells/well) and incubated under standard conditions for 1–2 weeks.
|
[
{
"tags": [
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"standard",
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"for",
"1–2",
"weeks",
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}
] |
PMC9429973
|
Methods: We retrospectively reviewed patients diagnosed with DLBCL and treated with R-CHOP from January 2010 to December 2020.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"R-CHOP",
"from",
"January",
"2010",
"to",
"December",
"2020",
"."
]
}
] |
PMC9429973
|
The main adverse reactions during the treatment were myelosuppression, of which the incidence of grade 3-4 myelosuppression was 21.43% in newly treated patients and 28.57% in refractory patients.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"patients",
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"28.57",
"%",
"in",
"refractory",
"patients",
"."
]
}
] |
PMC9429973
|
ERCC6L2 affects DNA repair, but also plays a role in immunoglobulin class-switching and mitochondrial function.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"affects",
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"a",
"role",
"in",
"immunoglobulin",
"class-switching",
"and",
"mitochondrial",
"function",
"."
]
}
] |
PMC6461034
|
‒The parameter is calculated by taking a goniometric correlate of the ratio of substrate‐centric and kinase‐centric evidence, and normalizing the corresponding angle on [0,π2] to give a value in .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"O",
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"0,π2",
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"a",
"value",
"in",
"."
]
}
] |
PMC11615218
|
They include cytotoxic T lymphocyte-associated antigen 4 (CTLA4), programmed cell death protein 1 (PD-1), lymphocyte activation gene 3 (LAG3), T-cell immunoglobulin mucin receptor 3 (TIM3), and T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT) .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
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"immunoglobulin",
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"ITIM",
"domains",
"(",
"TIGIT",
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"."
]
}
] |
PMC11429241
|
While 2D cell cultures offer simplicity, cost-effectiveness, and well-established methods for studying cancer cell behavior, they fall short in accurately replicating the intricate structure of native tumor tissue.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"replicating",
"the",
"intricate",
"structure",
"of",
"native",
"tumor",
"tissue",
"."
]
}
] |
PMC11525028
|
Organoids viability was measured using CellTiter-Glo Luminescent Cell Viability Assay kit (Promega, #G7572).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Organoids",
"viability",
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"Luminescent",
"Cell",
"Viability",
"Assay",
"kit",
"(",
"Promega",
",",
"#",
"G7572",
")",
"."
]
}
] |
PMC10882807
|
Tissues were immediately stored at -80 °C.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Tissues",
"were",
"immediately",
"stored",
"at",
"-80",
"°",
"C",
"."
]
}
] |
PMC9429973
|
Results: In this study,88 patients were diagnosed JMML from 2008 till now in our single institute, 44 cases (50%) without treatment (including chemotherapy and HSCT) in the whole course.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"this",
"study,88",
"patients",
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"44",
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"50",
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"without",
"treatment",
"(",
"including",
"chemotherapy",
"and",
"HSCT",
")",
"in",
"the",
"whole",
"course",
"."
]
}
] |
PMC11754432
|
1ALOX15B is upregulated in Psoriasis.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"1ALOX15B",
"is",
"upregulated",
"in",
"Psoriasis",
"."
]
}
] |
PMC11791203
|
In the current study, the anticancer activity of H. malabarica extracts was evaluated on the human cancer cell line, HT29 and compared with non-cancerous cell line HaCaT. Molecular docking was employed to delineate the possible targets involved in cytotoxicity.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
"I-CellLine",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"the",
"current",
"study",
",",
"the",
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"of",
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"cancer",
"cell",
"line",
",",
"HT29",
"and",
"compared",
"with",
"non-cancerous",
"cell",
"line",
"HaCaT.",
"Molecular",
"docking",
"was",
"employed",
"to",
"delineate",
"the",
"possible",
"targets",
"involved",
"in",
"cytotoxicity",
"."
]
}
] |
PMC11731614
|
Briefly, ion transfer tube temp = 275 °C, Easy-IC internal mass calibration, default charge state = 2 and cycle time = 3 s. Detector type set to Orbitrap, with 60K resolution, with wide quad isolation, mass range = normal, scan range = 375–1500 m/z, max injection time mode = Auto, AGC target = Standard, microscans = 1, S-lens RF level = 60, without source fragmentation, and datatype = Profile.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"ion",
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"60",
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"without",
"source",
"fragmentation",
",",
"and",
"datatype",
"=",
"Profile",
"."
]
}
] |
PMC11786704
|
In recent years, there have been significant advancements in polyphenol delivery systems, such as nanoencapsulation and liposome-based delivery systems, which have shown great potential in enhancing the stability and bioavailability of polyphenols .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"recent",
"years",
",",
"there",
"have",
"been",
"significant",
"advancements",
"in",
"polyphenol",
"delivery",
"systems",
",",
"such",
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"nanoencapsulation",
"and",
"liposome-based",
"delivery",
"systems",
",",
"which",
"have",
"shown",
"great",
"potential",
"in",
"enhancing",
"the",
"stability",
"and",
"bioavailability",
"of",
"polyphenols",
"."
]
}
] |
PMC9429973
|
Forty-three (45.3%) patients presented ≥3 HLH-2004 criteria and 34 pts (35.8%) had Hscore>169.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Forty-three",
"(",
"45.3",
"%",
")",
"patients",
"presented",
"≥3",
"HLH-2004",
"criteria",
"and",
"34",
"pts",
"(",
"35.8",
"%",
")",
"had",
"Hscore>169",
"."
]
}
] |
PMC10197932
|
500 µL of PI (50 µg/mL, Sigma) and 0,001% NP-40 were added.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"500",
"µL",
"of",
"PI",
"(",
"50",
"µg/mL",
",",
"Sigma",
")",
"and",
"0,001",
"%",
"NP-40",
"were",
"added",
"."
]
}
] |
PMC9646302
|
The potential mechanisms underlying ccRCC were explored in the present study.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"potential",
"mechanisms",
"underlying",
"ccRCC",
"were",
"explored",
"in",
"the",
"present",
"study",
"."
]
}
] |
PMC11477621
|
The flow cytometry data are shown in Figure 4 and Figure 5.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"flow",
"cytometry",
"data",
"are",
"shown",
"in",
"Figure",
"4",
"and",
"Figure",
"5",
"."
]
}
] |
PMC9587298
|
For example, the ingestion of natural plants subjected to severe stress, beverages and food products obtained by fermentation and thermally processed foods that might contain considerable amounts of MGO contribute to human exposure to this compound (Oliveira et al., 2021, Yeh et al., 2017).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"For",
"example",
",",
"the",
"ingestion",
"of",
"natural",
"plants",
"subjected",
"to",
"severe",
"stress",
",",
"beverages",
"and",
"food",
"products",
"obtained",
"by",
"fermentation",
"and",
"thermally",
"processed",
"foods",
"that",
"might",
"contain",
"considerable",
"amounts",
"of",
"MGO",
"contribute",
"to",
"human",
"exposure",
"to",
"this",
"compound",
"(",
"Oliveira",
"et",
"al.",
",",
"2021",
",",
"Yeh",
"et",
"al.",
",",
"2017",
")",
"."
]
}
] |
PMC11730305
|
It is the 5th and the 7th common cancer among men and women, respectively.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"It",
"is",
"the",
"5th",
"and",
"the",
"7th",
"common",
"cancer",
"among",
"men",
"and",
"women",
",",
"respectively",
"."
]
}
] |
PMC10958426
|
The features of cancer cells and tumor subclones is still not well investigation.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"features",
"of",
"cancer",
"cells",
"and",
"tumor",
"subclones",
"is",
"still",
"not",
"well",
"investigation",
"."
]
}
] |
PMC10170482
|
A comprehensive landscape of physical parameters and mechanical properties of ECM of the liver is still not fully understood.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"comprehensive",
"landscape",
"of",
"physical",
"parameters",
"and",
"mechanical",
"properties",
"of",
"ECM",
"of",
"the",
"liver",
"is",
"still",
"not",
"fully",
"understood",
"."
]
}
] |
PMC11295144
|
Quantitative analysis of the % area of synaptic contacts which was normalized to the expression of NL2 for each cell.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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PMC9429973
|
In clinical trials with myelodysplastic syndromes (MDS)/chronic myelomonocytic leukemia (CMML) patients, DEC-C provides DEC exposures that are equivalent to IV DEC at the approved dose of 20 mg/m daily×5 and is approved as INQOVI® in the US, Canada, and Australia.
|
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PMC9429973
|
Methods: A total of 33 patients with chromothripsis detected by CMA were included: 11 with chromothripsis-like patterns (≥7 switches), 22 with classical chromothripsis (≥10 switches).
|
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PMC11468365
|
The MolGraphConvFeaturizer extracts a comprehensive set of features that effectively capture the structural and chemical properties of molecules, making it a powerful tool for representing drugs.
|
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PMC10999934
|
The estimation of large-scale chromosomal copy number variation (CNV) in somatic cells was performed using the “infercnv” R package .
|
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PMC11429241
|
One of the main factors impacting their poor success is the inadequacy of the preclinical 2D culture models for accurately replicating the tumor microenvironment (TME).
|
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PMC5925824
|
Table on the right lists shared DEGsacross various tissues with fold-change > 1.7, p value < 0.05 for LY3300054 vs control We describe the discovery and pre-clinical characterization of LY3300054, an Fc effector function-silenced fully human antibody that binds to the PD-L1 checkpoint ligand and blocks interactions with both PD-1 and CD80 receptors.
|
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PMC11047729
|
With higher VC concentration, a greater rate of apoptosis was detected .
|
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PMC9927933
|
These findings suggested that DEPTOR accumulation, followed by mTORC1/2 inactivation, was causally related at least in part to the inhibition of growth and survival and induction of autophagy triggered by UBE2C knockdown in lung cancer cells.
|
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}
] |
PMC11615743
|
P values were determined by two‐sample equal variance two‐tailed t‐tests ( p < 0.001, p < 0.01, p < 0.05, ns = not significant).
|
[
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] |
PMC9429973
|
The RNA was sequenced on a NovaSeq 6000 (mean 270 million paired-end reads per sample, read length 150 bp).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
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] |
PMC11591030
|
The results were expressed as the mean values ± standard error of the mean (SEM).
|
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"O",
"O",
"O",
"O",
"O",
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}
] |
PMC9621239
|
Second, an explanation is provided for the clinical phenomenon wherein patients infected with genotype C or D HBV have a higher risk of HCC development compared with patients infected with genotype B HBV.
|
[
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"O",
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}
] |
PMC10890055
|
However, the sensitivity of hFOB 1.19 to zinc ions has not yet been studied.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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"yet",
"been",
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}
] |
PMC11798926
|
However, how SynDIG4 establishes and maintains these pools is unclear.
|
[
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"O",
"O",
"O",
"O",
"O",
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}
] |
PMC11757230
|
By contrast, Ahn et al. showed that human ADSCs inhibited the proliferation of the mouse TCL cell line EL4 with or without cell-to-cell contact, and Li et al. reported that human UCMSCs promoted the proliferation of the human BCL cell line Raji in a contact-dependent manner.
|
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PMC11552389
|
Significantly more autophagosomes were evident in drug-resistant cells as compared to drug-sensitive cells.
|
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"O",
"O",
"O",
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PMC11285179
|
RA is an active metabolite of retinol.
|
[
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"O",
"O",
"O",
"O",
"O",
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