null | _1
null | anti-cytokeratin14 ThermoFisherScientific
stringlengths 13
50
β | None
stringclasses 1
value | None_1
stringclasses 3
values | Cat#MA5-11599;RRID:AB_10982092
stringlengths 9
31
β | Elastase Sigma Cat#E1250
stringlengths 9
52
β | None_2
stringclasses 1
value | None_3
stringclasses 1
value | pheatmap(version:1.0.12) N/A
stringclasses 7
values | https://cran.r-project.org/web/packages/pheatmap/
index.html
stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|
null | null |
anti-cytokeratin10 Abcam
| null | null |
Cat#ab237775
| null | null | null | null | null |
null | null |
anti-Loricrin Abcam
| null | null |
Cat#ab85679;RRID:AB_2134912
| null | null | null | null | null |
null | null |
anti-ACTA2 Zsbio
| null | null |
Cat#UMAB437
| null | null | null | null | null |
null | null |
anti-Ki67 Zsbio
| null | null |
Cat#ZM0166
| null | null | null | null | null |
null | null |
anti-Ki67 Abcam
| null | null |
Cat#ab15580;
RRID:AB_443209
| null | null | null | null | null |
null | null |
anti-PCNA ABclonal
| null | null |
Cat#AB29;
RRID:AB_303394
| null | null | null | null | null |
null | null |
anti-Nitrotyrosine Millpore
| null | null |
Cat#06-284;
RRID:AB_310089
| null | null | null | null | null |
null | null |
anti-CPD CosmoBio
| null | null |
Cat#NM-DND-001;
RRID:AB_1962813
| null | null | null | null | null |
null | null |
anti-Vimentin ABclonal
| null | null |
Cat#A19607;
RRID:AB_2862696
| null | null | null | null | null |
null | null |
anti-DCT Abcam
| null | null |
Cat#ab74073;
RRID:AB_1524517
| null | null | null | null | null |
null | null |
anti-HES1 Abcam
| null | null |
Cat#ab108937;RRID:AB_10862625
| null | null | null | null | null |
null | null |
anti-b-tubulin SantaCruz
| null | null |
Cat#sc-5274;RRID:AB_2288090
| null | null | null | null | null |
null | null |
anti-CD207 Abcam
| null | null |
Cat#ab192027;
RRID:AB_2819089
| null | null | null | null | null |
null | null |
anti-VWF Dako
| null | null |
Cat#A0082
| null | null | null | null | null |
null | null |
anti-8-Hydroxydeoxyguanosine MyBioSource
| null | null |
Cat#MBS606843;
| null | null | null | null | null |
null | null |
anti-CYP27A1 Abcam
| null | null |
Cat#ab126785;
RRID:AB_11128459
| null | null | null | null | null |
null | null |
anti-COL17A1 Abcam
| null | null |
Cat#ab184996
| null | null | null | null | null |
null | null |
anti-SOX9 R&D
| null | null |
Cat#AF3075
| null | null | null | null | null |
null | null |
anti-MFAP5 Sigma
| null | null |
Cat#HPA010553
| null | null | null | null | null |
null | null |
anti-rabbitIgGAlexaFluor488 ThermoFisherScientific
| null | null |
Cat#A21206;
RRID:AB_2535792
| null | null | null | null | null |
null | null |
anti-mouseIgGAlexaFluor568
|
ThermoFisherScientific
|
Cat#A10037;
RRID:AB_2534013
| null | null | null | null | null |
|
null | null | null | null | null | null |
DeoxyribonucleaseI Worthington Cat#LS006333
| null | null | null | null |
null | null | null | null | null | null |
RBClysisbuffer BDBiosciences Cat#555899
| null | null | null | null |
null | null | null | null | null | null |
7-Amino-ActinomycinD(7-AAD) BDBiosciences Cat#559925
| null | null | null | null |
null | null | null | null | null | null |
Crystalviolet BiohaoBiotechnology,China Cat#0502
| null | null | null | null |
null | null | null | null | null | null |
Quercetinhydrate TCI Cat#P0042
| null | null | null | null |
null | null | null | null | null | null |
L-Ascorbicacid Sigma Cat#A4544-500G
| null | null | null | null |
null | null | null | null | null | null |
4%paraformaldehyde,PFA Dingguo,China Cat#AR-0211
| null | null | null | null |
null | null | null | null | null | null |
TritonX-100 Sigma-Aldrich Cat#T9284
| null | null | null | null |
null | null | null | null | null | null |
RNaseInhibitor ThermoFisherScientific Cat#AM2694
| null | null | null | null |
null | null | null |
Promega
| null |
Superasin
|
Cat#N2615
| null | null |
||
null | null | null | null | null | null | null | null | null |
ggplot2(version:3.2.1) Wickhametal.,2016
|
https://ggplot2.tidyverse.org/
|
null | null | null | null | null | null | null | null | null |
GENIE3(version:1.6.0) Huynh-Thuetal.,2010
|
https://bioconductor.org/packages/release/bioc/html/
GENIE3.html
|
null | null | null | null | null | null | null | null | null |
Cytoscape(version:3.7.1) Shannonetal.,2003
|
https://cytoscape.org/
|
null | null | null | null | null | null | null | null | null |
CellPhoneDB(version:1.1.0) Vento-Tormoetal.,2018
|
https://github.com/Teichlab/cellphonedb
|
null | null | null | null | null | null | null | null | null |
HISAT2(version:2.1.0) Kimetal.,2015
|
https://ccb.jhu.edu/software/hisat2/index.shtml
|
null | null | null | null | null | null | null | null | null |
RcisTarget(version:1.4.0) Aibaretal.,2017
|
https://bioconductor.org/packages/release/bioc/
html/RcisTarget.html
|
null | null | null |
Loveetal.,2014
| null | null | null | null |
DESeq2(version:1.2.4)
|
https://bioconductor.org/packages/release/bioc/
html/DESeq2.html
|
A Single-Cell Transcriptomic Atlas of Human Skin Aging
This dataset contains structured tables extracted from the supplementary materials of the publication:
"A single-cell transcriptomic atlas of human skin aging"
Cell Reports, 2020
DOI: 10.1016/j.celrep.2020.108132
The data has been processed from the publication PDF into a .parquet file to facilitate downstream analysis and integration into machine learning workflows.
π¦ Dataset Description
The dataset includes multiple tables capturing aging-related transcriptomic changes in human skin tissue at the single-cell level. Tables were extracted using PDF parsing tools and contain gene expression summaries and annotations useful for skin biology and aging research.
π§ Usage Instructions
To load the Parquet file in Python:
import pandas as pd
df = pd.read_parquet("skin_aging_data.parquet")
print(df.head())
π Use Cases
- Aging biomarker discovery in dermal and epidermal compartments
- Training skin-specific biological age predictors
- Integrating skin aging profiles with other tissue atlases
- Cross-species comparison of skin aging signatures
- Evaluation of anti-aging interventions at single-cell resolution
π Citation
If you use this dataset, please cite:
Xie, W., et al. A single-cell transcriptomic atlas of human skin aging. Cell Reports, 2020.
DOI: 10.1016/j.celrep.2020.108132
π Acknowledgments
This dataset was curated and converted by Iris Lee for open access machine learning research in aging biology and skin regeneration. ### π§βπ» Team: MultiModalMillenials. Iris Lee (@iris8090)
Source publication by Xie et al. (2020) β Cell Reports.
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