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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'id', 'concepts', 'caption', 'concepts_manual'}) and 2 missing columns ({'CUI', 'Canonical name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/saad003/Dataset_final/metadata.csv (at revision 21c21350340b1c7ada55181813f90c360a217cbb)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
id: string
caption: string
concepts: string
concepts_manual: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 727
to
{'CUI': Value('string'), 'Canonical name': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1339, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 972, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'id', 'concepts', 'caption', 'concepts_manual'}) and 2 missing columns ({'CUI', 'Canonical name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/saad003/Dataset_final/metadata.csv (at revision 21c21350340b1c7ada55181813f90c360a217cbb)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
CUI
string | Canonical name
string |
|---|---|
C0016522
|
Foramen Ovale, Patent
|
C0457846
|
Cervical segment of spinal cord
|
C0578537
|
Cavitation of lung
|
C0179751
|
Epidural catheter
|
C3489393
|
Hiatal Hernia
|
C0730166
|
Bone structure of fifth metacarpal
|
C1261077
|
Structure of left lower lobe of lung
|
C0152443
|
Urethral diverticulum
|
C0227301
|
Descending part of duodenum
|
C0031354
|
Pharyngeal structure
|
C4039172
|
Posterior point of nasal spine
|
C0227387
|
Left colic flexure
|
C0227385
|
Hepatic flexure of colon
|
C0228126
|
Leptomeninges
|
C0230436
|
Popliteal fossa structure
|
C0037922
|
Spinal Canal
|
C1260954
|
Morphologically altered structure
|
C0450184
|
Jejunal loop
|
C0729936
|
Cardiac chamber structure
|
C0032718
|
Portal vein structure
|
C0149543
|
Base of skull structure
|
C0027540
|
Necrosis
|
C0582254
|
Entire intrahepatic part of main portal vein
|
C0227375
|
Ascending colon
|
C0006441
|
Synovial bursa
|
C0041967
|
Urethra
|
C0729538
|
Saphenous vein graft
|
C0007144
|
Cardia of stomach
|
C0341539
|
Parastomal hernia
|
C0085221
|
Structure of psoas muscle
|
C0007473
|
Structure of cavernous sinus
|
C0227997
|
Structure of right testis
|
C0015426
|
Eyelid structure
|
C0013303
|
Duodenum
|
C0162859
|
Common carotid artery
|
C0333161
|
Pseudocyst
|
C1261084
|
Common iliac artery structure
|
C0225708
|
Structure of base of right lung
|
C2973725
|
Pulmonary arterial hypertension
|
C0224378
|
Structure of transversus abdominis muscle
|
C0007966
|
Cheek structure
|
C1321756
|
Achalasia
|
C0028784
|
Occipital bone structure
|
C0007531
|
Cecum
|
C0227457
|
Structure of left parotid gland
|
C0042232
|
Vagina
|
C0264972
|
Aneurysm of hepatic artery
|
C0341318
|
Enterocutaneous Fistula
|
C0003855
|
Arteriovenous fistula
|
C0262431
|
Compression fracture of vertebral column
|
C0040761
|
Transposition of Great Vessels
|
C0226707
|
Structure of middle hepatic vein
|
C0184149
|
Nephrostomy tube
|
C1261316
|
Right coronary artery structure
|
C0013687
|
effusion
|
C0010384
|
Prostheses, Dental, Fixed, Crown, Total, Temporary
|
C0442872
|
Multiple cysts
|
C0225599
|
Tracheal bronchus
|
C0001863
|
Air bubble
|
C0228515
|
Cerebellar peduncle
|
C0004455
|
Structure of axillary artery
|
C0230140
|
Structure of right thoracic cavity
|
C0026764
|
Multiple Myeloma
|
C0042591
|
Vessel Positions
|
C1275667
|
Common femoral vein
|
C0227011
|
Neck of tooth
|
C5231045
|
Structure of prostatic artery
|
C1305393
|
Entire posterior fossa of cranial cavity
|
C0007276
|
Internal carotid artery structure
|
C0011906
|
Differential Diagnosis
|
C0224234
|
Structure of deltoid muscle
|
C0206635
|
Myelolipoma
|
C0227472
|
Structure of submaxillary duct
|
C0225261
|
Iliac fascia structure
|
C1288329
|
Structure of lower uterine segment
|
C0003090
|
Ankylosis
|
C0038001
|
Structure of splenic vein
|
C0546483
|
Lung cyst
|
C0013075
|
Structure of rectouterine pouch
|
C0020164
|
Bone structure of humerus
|
C0587240
|
Erosion of bone
|
C0227230
|
Body of stomach
|
C0224445
|
Structure of vastus medialis muscle
|
C0152254
|
Fatty degeneration
|
C0223741
|
Trapezoid bone structure
|
C0224419
|
Structure of psoas major muscle
|
C0227028
|
Maxillary teeth
|
C0227560
|
Structure of left hepatic duct
|
C0025202
|
melanoma
|
C1456806
|
Entire pulmonary vein
|
C0222647
|
Structure of long bone
|
C0226087
|
Left common carotid artery structure
|
C0581269
|
Thoracic spine structure
|
C0223947
|
Navicular Bone of Foot
|
C0223078
|
Transverse Processes
|
C0020663
|
Hypothalamic structure
|
C0227716
|
Neck of urinary bladder
|
C0333186
|
Restenosis
|
C0332448
|
Infiltration
|
C0240708
|
Calcification of pericardium
|
End of preview.
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